HL_4V4V_098

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_098 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1629

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V4V|1|B0|A|2471
4V4V|1|B0|G|2472
4V4V|1|B0|U|2473
4V4V|1|B0|U|2474
4V4V|1|B0|C|2475
4V4V|1|B0|A|2476
4V4V|1|B0|U|2477
4V4V|1|B0|A|2478
4V4V|1|B0|U|2479

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA