3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
AGCCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4V_103 not in the Motif Atlas
Homologous match to HL_7A0S_064
Geometric discrepancy: 0.1754
The information below is about HL_7A0S_064
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

4V4V|1|B0|A|2700
4V4V|1|B0|G|2702
4V4V|1|B0|C|2703
4V4V|1|B0|C|2704
4V4V|1|B0|A|2705
4V4V|1|B0|U|2707

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain BL
50S ribosomal protein L17

Coloring options:


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