HL_4V4V_104

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V4V|1|B0|G|2751, 4V4V|1|B0|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_104 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1168

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4V4V|1|B0|C|2745
4V4V|1|B0|U|2746
4V4V|1|B0|G|2747
4V4V|1|B0|A|2748
4V4V|1|B0|A|2749
4V4V|1|B0|A|2750
4V4V|1|B0|G|2751
4V4V|1|B0|C|2752
4V4V|1|B0|A|2753
4V4V|1|B0|U|2754
4V4V|1|B0|C|2755
4V4V|1|B0|U|2756
4V4V|1|B0|A|2757
4V4V|1|B0|A|2758
4V4V|1|B0|G|2759

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L6