HL_4V4V_107

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_107 not in the Motif Atlas

Geometric match to HL_4V9F_074

Geometric discrepancy: 0.2686

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4V|1|B9|A|34
4V4V|1|B9|C|35
4V4V|1|B9|C|36
4V4V|1|B9|C|37
4V4V|1|B9|C|38
4V4V|1|B9|A|39
4V4V|1|B9|U|40
4V4V|1|B9|G|41
4V4V|1|B9|C|42
4V4V|1|B9|C|43
4V4V|1|B9|G|44
4V4V|1|B9|A|45
4V4V|1|B9|A|46
4V4V|1|B9|C|47
4V4V|1|B9|U|48

Current chains

Chain B9

5S ribosomal RNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S ribosomal protein L5

Chain BM

50S ribosomal protein L18