HL_4V4V_119

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGGCCUUGAAAUACCACCCUUU

Length

76 nucleotides

Bulged bases

4V4V|1|B0|U|2109, 4V4V|1|B0|U|2111, 4V4V|1|B0|G|2112, 4V4V|1|B0|U|2113, 4V4V|1|B0|A|2114, 4V4V|1|B0|G|2115, 4V4V|1|B0|G|2116, 4V4V|1|B0|G|2128, 4V4V|1|B0|C|2129, 4V4V|1|B0|U|2130, 4V4V|1|B0|U|2131, 4V4V|1|B0|A|2134, 4V4V|1|B0|A|2135, 4V4V|1|B0|U|2139, 4V4V|1|B0|G|2140, 4V4V|1|B0|C|2143, 4V4V|1|B0|G|2144, 4V4V|1|B0|C|2145, 4V4V|1|B0|C|2146, 4V4V|1|B0|A|2147, 4V4V|1|B0|C|2153, 4V4V|1|B0|A|2154, 4V4V|1|B0|G|2157, 4V4V|1|B0|A|2158, 4V4V|1|B0|G|2159, 4V4V|1|B0|C|2160, 4V4V|1|B0|U|2167, 4V4V|1|B0|A|2170, 4V4V|1|B0|U|2172, 4V4V|1|B0|A|2173, 4V4V|1|B0|C|2174, 4V4V|1|B0|C|2175, 4V4V|1|B0|A|2176, 4V4V|1|B0|C|2177, 4V4V|1|B0|C|2178

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|G|2107
4V4V|1|B0|A|2108
4V4V|1|B0|U|2109
4V4V|1|B0|G|2110
4V4V|1|B0|U|2111
4V4V|1|B0|G|2112
4V4V|1|B0|U|2113
4V4V|1|B0|A|2114
4V4V|1|B0|G|2115
4V4V|1|B0|G|2116
4V4V|1|B0|A|2117
4V4V|1|B0|U|2118
4V4V|1|B0|A|2119
4V4V|1|B0|G|2120
4V4V|1|B0|G|2121
4V4V|1|B0|U|2122
4V4V|1|B0|G|2123
4V4V|1|B0|G|2124
4V4V|1|B0|G|2125
4V4V|1|B0|A|2126
4V4V|1|B0|G|2127
4V4V|1|B0|G|2128
4V4V|1|B0|C|2129
4V4V|1|B0|U|2130
4V4V|1|B0|U|2131
4V4V|1|B0|U|2132
4V4V|1|B0|G|2133
4V4V|1|B0|A|2134
4V4V|1|B0|A|2135
4V4V|1|B0|G|2136
4V4V|1|B0|U|2137
4V4V|1|B0|G|2138
4V4V|1|B0|U|2139
4V4V|1|B0|G|2140
4V4V|1|B0|G|2141
4V4V|1|B0|A|2142
4V4V|1|B0|C|2143
4V4V|1|B0|G|2144
4V4V|1|B0|C|2145
4V4V|1|B0|C|2146
4V4V|1|B0|A|2147
4V4V|1|B0|G|2148
4V4V|1|B0|U|2149
4V4V|1|B0|C|2150
4V4V|1|B0|U|2151
4V4V|1|B0|G|2152
4V4V|1|B0|C|2153
4V4V|1|B0|A|2154
4V4V|1|B0|U|2155
4V4V|1|B0|G|2156
4V4V|1|B0|G|2157
4V4V|1|B0|A|2158
4V4V|1|B0|G|2159
4V4V|1|B0|C|2160
4V4V|1|B0|C|2161
4V4V|1|B0|G|2162
4V4V|1|B0|G|2163
4V4V|1|B0|C|2164
4V4V|1|B0|C|2165
4V4V|1|B0|U|2166
4V4V|1|B0|U|2167
4V4V|1|B0|G|2168
4V4V|1|B0|A|2169
4V4V|1|B0|A|2170
4V4V|1|B0|A|2171
4V4V|1|B0|U|2172
4V4V|1|B0|A|2173
4V4V|1|B0|C|2174
4V4V|1|B0|C|2175
4V4V|1|B0|A|2176
4V4V|1|B0|C|2177
4V4V|1|B0|C|2178
4V4V|1|B0|C|2179
4V4V|1|B0|U|2180
4V4V|1|B0|U|2181
4V4V|1|B0|U|2182

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal subunit protein S11

Chain AW

Transfer RNA; tRNA

Chain B2

50S ribosomal protein L1