HL_4V4V_125

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUAACG

Length

7 nucleotides

Bulged bases

4V4V|1|B0|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_125 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2288

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V4V|1|B0|U|955
4V4V|1|B0|G|956
4V4V|1|B0|U|958
4V4V|1|B0|A|959
4V4V|1|B0|A|960
4V4V|1|B0|C|961
4V4V|1|B0|G|962

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L16