HL_4V4W_010

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_010 not in the Motif Atlas

Homologous match to HL_6CZR_081

Geometric discrepancy: 0.1063

The information below is about HL_6CZR_081

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4W|1|AA|C|379
4V4W|1|AA|G|380
4V4W|1|AA|C|381
4V4W|1|AA|A|382
4V4W|1|AA|A|383
4V4W|1|AA|G|384

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal subunit protein S16