4V4W Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V4W_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_4V4W_002 | 1/AA/80:89 | No text annotation | homologous HL_4LFB_002 HL_31585.4 | |
HL_4V4W_003 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
HL_4V4W_120 | 1/AA/186:191 | No text annotation | ||
HL_4V4W_005 | 1/AA/200:217 | No text annotation | homologous HL_6CZR_076 NA | |
HL_4V4W_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_4V4W_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
HL_4V4W_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_4V4W_009 | 1/AA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
HL_4V4W_010 | 1/AA/379:384 | GNRA | homologous HL_6CZR_081 NA | |
HL_4V4W_011 | 1/AA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_4V4W_012 | 1/AA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
HL_4V4W_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_4V4W_014 | 1/AA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
HL_4V4W_015 | 1/AA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
HL_4V4W_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
HL_4V4W_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
HL_4V4W_121 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
HL_4V4W_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
HL_4V4W_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
HL_4V4W_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_4V4W_109 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
HL_4V4W_023 | 1/AA/1028:1033 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
HL_4V4W_024 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
HL_4V4W_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_4V4W_026 | 1/AA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_4V4W_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
HL_4V4W_028 | 1/AA/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
HL_4V4W_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_4V4W_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_4V4W_031 | 1/AA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_4V4W_032 | 1/AA/1515:1520 | GNRA variation | geometric HL_4V88_222 NA | |
HL_4V4W_033 | 1/AU/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
HL_4V4W_034 | 1/AU/30:40 | No text annotation | homologous HL_5IB8_208 HL_36684.4 | |
HL_4V4W_035 | 1/AU/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V90_034 HL_28252.8 | |
HL_4V4W_036 | 1/AV/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
HL_4V4W_037 | 1/AV/30:40 | No text annotation | homologous HL_5IB8_208 HL_36684.4 | |
HL_4V4W_038 | 1/AV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V90_034 HL_28252.8 | |
HL_4V4W_039 | 1/AW/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
HL_4V4W_040 | 1/AW/30:40 | No text annotation | homologous HL_5IB8_208 HL_36684.4 | |
HL_4V4W_041 | 1/AW/53:61 | No text annotation | homologous HL_2AKE_003 NA | |
HL_4V4W_042 | 1/B0/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_4V4W_112 | 1/B0/87:95 | No text annotation | homologous HL_9DFE_002 HL_77600.2 | |
HL_4V4W_044 | 1/B0/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_4V4W_045 | 1/B0/154:172 | No text annotation | geometric HL_4V9F_005 HL_87954.2 | |
HL_4V4W_046 | 1/B0/194:201 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
HL_4V4W_047 | 1/B0/225:230 | No text annotation | ||
HL_4V4W_048 | 1/B0/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
HL_4V4W_049 | 1/B0/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
HL_4V4W_050 | 1/B0/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
HL_4V4W_051 | 1/B0/381:393 | No text annotation | geometric HL_4V9F_013 HL_87463.1 | |
HL_4V4W_052 | 1/B0/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_4V4W_053 | 1/B0/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
HL_4V4W_054 | 1/B0/543:551 | No text annotation | ||
HL_4V4W_055 | 1/B0/566:575 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_010 HL_01609.3 | |
HL_4V4W_056 | 1/B0/606:622 | No text annotation | ||
HL_4V4W_057 | 1/B0/628:635 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
HL_4V4W_058 | 1/B0/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
HL_4V4W_059 | 1/B0/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
HL_4V4W_060 | 1/B0/744:753 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
HL_4V4W_061 | 1/B0/779:785 | UNCG | geometric HL_6JQ6_004 HL_34617.5 | |
HL_4V4W_062 | 1/B0/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
HL_4V4W_063 | 1/B0/883:893 | No text annotation | ||
HL_4V4W_122 | 1/B0/955:962 | No text annotation | geometric HL_8CRE_038 HL_75660.5 | |
HL_4V4W_065 | 1/B0/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
HL_4V4W_066 | 1/B0/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
HL_4V4W_067 | 1/B0/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
HL_4V4W_123 | 1/B0/1171:1178 | GNRA | geometric HL_7WKP_001 HL_37824.7 | |
HL_4V4W_069 | 1/B0/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
HL_4V4W_070 | 1/B0/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_28252.8 | |
HL_4V4W_115 | 1/B0/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
HL_4V4W_072 | 1/B0/1363:1368 | Externally structured | geometric HL_5TBW_022 NA | |
HL_4V4W_073 | 1/B0/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
HL_4V4W_074 | 1/B0/1451:1461 | No text annotation | ||
HL_4V4W_075 | 1/B0/1486:1502 | No text annotation | ||
HL_4V4W_076 | 1/B0/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
HL_4V4W_116 | 1/B0/1630:1636 | No text annotation | ||
HL_4V4W_078 | 1/B0/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
HL_4V4W_079 | 1/B0/1718:1741 | No text annotation | homologous HL_7RQB_043 NA | |
HL_4V4W_080 | 1/B0/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
HL_4V4W_081 | 1/B0/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
HL_4V4W_082 | 1/B0/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
HL_4V4W_083 | 1/B0/1864:1878 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
HL_4V4W_117 | 1/B0/1911:1919 | tRNA anticodon loop | geometric HL_4MGN_003 HL_06059.6 | |
HL_4V4W_085 | 1/B0/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
HL_4V4W_086 | 1/B0/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
HL_4V4W_087 | 1/B0/2108:2182 | No text annotation | ||
HL_4V4W_088 | 1/B0/2209:2215 | GNRA | geometric HL_6N2V_003 HL_37824.7 | |
HL_4V4W_089 | 1/B0/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
HL_4V4W_090 | 1/B0/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
HL_4V4W_091 | 1/B0/2303:2313 | No text annotation | ||
HL_4V4W_092 | 1/B0/2324:2331 | Pseudoknot geometry | homologous HL_4WF9_052 HL_93324.4 | |
HL_4V4W_124 | 1/B0/2355:2362 | No text annotation | ||
HL_4V4W_094 | 1/B0/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
HL_4V4W_095 | 1/B0/2404:2413 | No text annotation | geometric HL_4V83_139 NA | |
HL_4V4W_118 | 1/B0/2466:2484 | No text annotation | ||
HL_4V4W_096 | 1/B0/2470:2480 | No text annotation | geometric HL_4V9F_019 HL_80922.2 | |
HL_4V4W_097 | 1/B0/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
HL_4V4W_098 | 1/B0/2549:2559 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_4V4W_099 | 1/B0/2594:2599 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
HL_4V4W_100 | 1/B0/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.7 | |
HL_4V4W_101 | 1/B0/2700:2707 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
HL_4V4W_102 | 1/B0/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
HL_4V4W_103 | 1/B0/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_4V4W_104 | 1/B0/2854:2863 | No text annotation | ||
HL_4V4W_125 | 1/B9/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
HL_4V4W_106 | 1/B9/86:90 | No text annotation | geometric HL_4V9F_003 HL_75660.5 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V4W_107 | GNRA with near cWW | ||
HL_4V4W_004 | No text annotation | ||
HL_4V4W_108 | No text annotation | ||
HL_4V4W_018 | No text annotation | ||
HL_4V4W_022 | No text annotation | ||
HL_4V4W_110 | No text annotation | ||
HL_4V4W_111 | No text annotation | ||
HL_4V4W_043 | No text annotation | ||
HL_4V4W_113 | No text annotation | ||
HL_4V4W_114 | No text annotation | ||
HL_4V4W_064 | No text annotation | ||
HL_4V4W_068 | Anticodon loop related | ||
HL_4V4W_071 | No text annotation | ||
HL_4V4W_077 | GNRA with extra cWW | ||
HL_4V4W_084 | No text annotation | ||
HL_4V4W_093 | No text annotation | ||
HL_4V4W_119 | No text annotation | ||
HL_4V4W_105 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V4W_112 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
IL_4V4W_002 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_4V4W_003 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
IL_4V4W_113 | 1/AA/67:69, 1/AA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
IL_4V4W_005 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
IL_4V4W_006 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
IL_4V4W_007 | 1/AA/144:146, 1/AA/176:178 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
IL_4V4W_008 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_4V4W_009 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
IL_4V4W_114 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
IL_4V4W_011 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
IL_4V4W_012 | 1/AA/371:375, 1/AA/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
IL_4V4W_116 | 1/AA/371:376, 1/AA/387:390 | No text annotation | ||
IL_4V4W_013 | 1/AA/375:377, 1/AA/386:389 | Single bulged G, near cWW | homologous IL_6CZR_128 NA | |
IL_4V4W_154 | 1/AA/409:416, 1/AA/427:433 | No text annotation | ||
IL_4V4W_155 | 1/AA/446:455, 1/AA/477:488 | No text annotation | ||
IL_4V4W_015 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_4V4W_119 | 1/AA/504:512, 1/AA/539:541 | Isolated non-canonical cWW pair | geometric IL_4V83_235 IL_07785.1 | |
IL_4V4W_016 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
IL_4V4W_156 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
IL_4V4W_018 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
IL_4V4W_019 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
IL_4V4W_157 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
IL_4V4W_121 | 1/AA/657:659, 1/AA/746:749 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
IL_4V4W_022 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
IL_4V4W_122 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
IL_4V4W_024 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_4V4W_025 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
IL_4V4W_026 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
IL_4V4W_027 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
IL_4V4W_028 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
IL_4V4W_029 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation | homologous IL_6CZR_149 NA | |
IL_4V4W_158 | 1/AA/951:954, 1/AA/1226:1230 | No text annotation | ||
IL_4V4W_030 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
IL_4V4W_031 | 1/AA/1025:1028, 1/AA/1033:1036 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_85033.2 | |
IL_4V4W_125 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
IL_4V4W_033 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
IL_4V4W_034 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
IL_4V4W_035 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.6 | |
IL_4V4W_126 | 1/AA/1060:1063, 1/AA/1193:1197 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
IL_4V4W_036 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
IL_4V4W_037 | 1/AA/1121:1128, 1/AA/1143:1152 | No text annotation | ||
IL_4V4W_127 | 1/AA/1123:1132, 1/AA/1142:1150 | No text annotation | ||
IL_4V4W_038 | 1/AA/1128:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_15052.4 | |
IL_4V4W_039 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
IL_4V4W_040 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
IL_4V4W_041 | 1/AA/1303:1309, 1/AA/1328:1334 | No text annotation | ||
IL_4V4W_128 | 1/AA/1404:1407, 1/AA/1494:1497 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_85033.2 | |
IL_4V4W_042 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
IL_4V4W_043 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
IL_4V4W_044 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
IL_4V4W_045 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | geometric IL_3D0U_002 IL_09705.15 | |
IL_4V4W_046 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_4V4W_047 | 1/AA/1440:1448, 1/AA/1455:1461 | No text annotation | ||
IL_4V4W_048 | 1/B0/24:30, 1/B0/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
IL_4V4W_049 | 1/B0/30:31, 1/B0/474:510 | No text annotation | ||
IL_4V4W_050 | 1/B0/36:37, 1/B0/442:444 | Single bulged A | homologous IL_4WF9_002 IL_31462.6 | |
IL_4V4W_051 | 1/B0/42:45, 1/B0/433:437 | Major groove platform with extra cWW | geometric IL_4V9F_003 IL_51387.2 | |
IL_4V4W_052 | 1/B0/81:85, 1/B0/97:105 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
IL_4V4W_053 | 1/B0/183:184, 1/B0/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
IL_4V4W_054 | 1/B0/188:194, 1/B0/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
IL_4V4W_131 | 1/B0/239:245, 1/B0/253:258 | No text annotation | homologous IL_9DFE_007 IL_26307.2 | |
IL_4V4W_056 | 1/B0/273:281, 1/B0/359:364 | No text annotation | ||
IL_4V4W_159 | 1/B0/285:292, 1/B0/347:355 | No text annotation | ||
IL_4V4W_057 | 1/B0/564:566, 1/B0/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
IL_4V4W_058 | 1/B0/672:674, 1/B0/806:808 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
IL_4V4W_059 | 1/B0/674:679, 1/B0/798:806 | No text annotation | ||
IL_4V4W_060 | 1/B0/702:707, 1/B0/724:730 | No text annotation | geometric IL_4V88_462 NA | |
IL_4V4W_061 | 1/B0/738:741, 1/B0/756:758 | No text annotation | geometric IL_6CZR_136 NA | |
IL_4V4W_160 | 1/B0/856:872, 1/B0/905:921 | No text annotation | ||
IL_4V4W_062 | 1/B0/875:879, 1/B0/898:902 | No text annotation | geometric IL_5TBW_121 NA | |
IL_4V4W_134 | 1/B0/998:1002, 1/B0/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
IL_4V4W_135 | 1/B0/1004:1013, 1/B0/1149:1151 | No text annotation | ||
IL_4V4W_161 | 1/B0/1018:1024, 1/B0/1140:1144 | Kink-turn related | homologous IL_7A0S_036 IL_57188.5 | |
IL_4V4W_137 | 1/B0/1024:1031, 1/B0/1123:1140 | No text annotation | ||
IL_4V4W_066 | 1/B0/1031:1034, 1/B0/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
IL_4V4W_138 | 1/B0/1031:1037, 1/B0/1118:1123 | No text annotation | geometric IL_6CZR_369 NA | |
IL_4V4W_067 | 1/B0/1038:1041, 1/B0/1114:1117 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
IL_4V4W_139 | 1/B0/1038:1051, 1/B0/1108:1117 | No text annotation | ||
IL_4V4W_068 | 1/B0/1041:1052, 1/B0/1107:1114 | No text annotation | ||
IL_4V4W_069 | 1/B0/1059:1062, 1/B0/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
IL_4V4W_141 | 1/B0/1087:1090, 1/B0/1101:1102 | Major groove platform | homologous IL_5J7L_385 IL_48076.6 | |
IL_4V4W_071 | 1/B0/1202:1207, 1/B0/1239:1243 | No text annotation | geometric IL_5TBW_121 NA | |
IL_4V4W_072 | 1/B0/1208:1215, 1/B0/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
IL_4V4W_073 | 1/B0/1310:1313, 1/B0/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
IL_4V4W_074 | 1/B0/1319:1323, 1/B0/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
IL_4V4W_075 | 1/B0/1350:1355, 1/B0/1376:1381 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_49767.8 | |
IL_4V4W_076 | 1/B0/1357:1359, 1/B0/1372:1374 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_87907.2 | |
IL_4V4W_162 | 1/B0/1357:1361, 1/B0/1370:1374 | No text annotation | ||
IL_4V4W_077 | 1/B0/1359:1362, 1/B0/1369:1372 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
IL_4V4W_144 | 1/B0/1413:1424, 1/B0/1574:1589 | No text annotation | ||
IL_4V4W_078 | 1/B0/1424:1429, 1/B0/1564:1574 | No text annotation | ||
IL_4V4W_079 | 1/B0/1432:1435, 1/B0/1557:1561 | Tandem non-canonical cWW pairs | geometric IL_402D_001 IL_77658.1 | |
IL_4V4W_080 | 1/B0/1436:1440, 1/B0/1551:1556 | tSH-tHW-tHS | geometric IL_4V9F_055 IL_17136.7 | |
IL_4V4W_081 | 1/B0/1449:1451, 1/B0/1461:1462 | Single stack bend | geometric IL_7RQB_058 NA | |
IL_4V4W_082 | 1/B0/1472:1474, 1/B0/1518:1519 | No text annotation | ||
IL_4V4W_147 | 1/B0/1474:1482, 1/B0/1506:1518 | No text annotation | ||
IL_4V4W_083 | 1/B0/1651:1659, 1/B0/2001:2006 | No text annotation | ||
IL_4V4W_163 | 1/B0/1651:1665, 1/B0/1995:2006 | No text annotation | ||
IL_4V4W_084 | 1/B0/1659:1666, 1/B0/1994:2001 | No text annotation | ||
IL_4V4W_085 | 1/B0/1666:1669, 1/B0/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
IL_4V4W_086 | 1/B0/1669:1674, 1/B0/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
IL_4V4W_087 | 1/B0/1686:1691, 1/B0/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
IL_4V4W_088 | 1/B0/1770:1771, 1/B0/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.6 | |
IL_4V4W_089 | 1/B0/1798:1804, 1/B0/1813:1821 | Kink-turn related | homologous IL_4WF9_069 IL_17069.5 | |
IL_4V4W_150 | 1/B0/1846:1861, 1/B0/1881:1894 | No text annotation | ||
IL_4V4W_151 | 1/B0/2049:2052, 1/B0/2617:2619 | No text annotation | geometric IL_4V9F_072 IL_55516.2 | |
IL_4V4W_090 | 1/B0/2050:2053, 1/B0/2616:2618 | No text annotation | geometric IL_6CZR_136 NA | |
IL_4V4W_091 | 1/B0/2054:2056, 1/B0/2612:2615 | No text annotation | homologous IL_4WF9_079 IL_83389.2 | |
IL_4V4W_092 | 1/B0/2072:2075, 1/B0/2435:2437 | No text annotation | ||
IL_4V4W_093 | 1/B0/2103:2105, 1/B0/2184:2186 | Isolated non-canonical cWW pair | geometric IL_5TBW_115 NA | |
IL_4V4W_094 | 1/B0/2105:2108, 1/B0/2182:2184 | No text annotation | geometric IL_4P3T_002 NA | |
IL_4V4W_095 | 1/B0/2297:2299, 1/B0/2317:2321 | Isolated tHS basepair with bulges | geometric IL_4V9F_080 IL_61476.2 | |
IL_4V4W_096 | 1/B0/2350:2353, 1/B0/2364:2367 | Tandem non-canonical cWW pairs | geometric IL_1JID_002 IL_85033.2 | |
IL_4V4W_097 | 1/B0/2457:2461, 1/B0/2489:2494 | No text annotation | ||
IL_4V4W_098 | 1/B0/2466:2470, 1/B0/2480:2484 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
IL_4V4W_099 | 1/B0/2515:2516, 1/B0/2568:2570 | Single stack bend | geometric IL_6FZ0_001 IL_90729.1 | |
IL_4V4W_100 | 1/B0/2521:2523, 1/B0/2540:2544 | No text annotation | ||
IL_4V4W_101 | 1/B0/2591:2592, 1/B0/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
IL_4V4W_152 | 1/B0/2650:2658, 1/B0/2663:2670 | No text annotation | ||
IL_4V4W_102 | 1/B0/2652:2658, 1/B0/2663:2668 | No text annotation | ||
IL_4V4W_103 | 1/B0/2680:2684, 1/B0/2725:2727 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
IL_4V4W_104 | 1/B0/2687:2691, 1/B0/2718:2722 | UAA/GAN | geometric IL_4V9F_094 IL_23774.1 | |
IL_4V4W_105 | 1/B0/2695:2696, 1/B0/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
IL_4V4W_153 | 1/B0/2695:2697, 1/B0/2710:2714 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
IL_4V4W_106 | 1/B0/2737:2742, 1/B0/2762:2767 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_49767.8 | |
IL_4V4W_164 | 1/B0/2838:2839, 1/B0/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
IL_4V4W_108 | 1/B0/2843:2846, 1/B0/2870:2874 | No text annotation | geometric IL_1GID_008 NA | |
IL_4V4W_109 | 1/B0/2847:2852, 1/B0/2865:2869 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
IL_4V4W_110 | 1/B9/23:30, 1/B9/54:60 | No text annotation | ||
IL_4V4W_165 | 1/B9/30:31, 1/B9/51:54 | No text annotation | homologous IL_9DFE_112 IL_68140.4 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V4W_001 | Isolated non-canonical cWW pair | ||
IL_4V4W_004 | Tandem non-canonical cWW pairs | ||
IL_4V4W_010 | No text annotation | ||
IL_4V4W_115 | No text annotation | ||
IL_4V4W_117 | No text annotation | ||
IL_4V4W_014 | No text annotation | ||
IL_4V4W_118 | No text annotation | ||
IL_4V4W_017 | tSH-tHW-tHS-cWW | ||
IL_4V4W_120 | No text annotation | ||
IL_4V4W_020 | No text annotation | ||
IL_4V4W_021 | No text annotation | ||
IL_4V4W_023 | No text annotation | ||
IL_4V4W_123 | Isolated non-canonical cWW pair | ||
IL_4V4W_124 | No text annotation | ||
IL_4V4W_032 | Isolated non-canonical cWW pair | ||
IL_4V4W_129 | Tandem non-canonical cWW pairs | ||
IL_4V4W_130 | Triple sheared | ||
IL_4V4W_055 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V4W_132 | No text annotation | ||
IL_4V4W_133 | Isolated non-canonical cWW pair | ||
IL_4V4W_063 | UAA/GAN with extra cWW | ||
IL_4V4W_064 | No text annotation | ||
IL_4V4W_136 | No text annotation | ||
IL_4V4W_065 | No text annotation | ||
IL_4V4W_140 | No text annotation | ||
IL_4V4W_070 | Major groove platform with extra cWW | ||
IL_4V4W_142 | No text annotation | ||
IL_4V4W_143 | No text annotation | ||
IL_4V4W_145 | No text annotation | ||
IL_4V4W_146 | Partly complementary | ||
IL_4V4W_148 | No text annotation | ||
IL_4V4W_149 | Isolated non-canonical cWW pair | ||
IL_4V4W_107 | Isolated non-canonical cWW with bulges | ||
IL_4V4W_111 | 8-nt loop receptor |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V4W_001 | 1/AA/46:52, 1/AA/359:369, 1/AA/392:395 | No text annotation | ||
J3_4V4W_002 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_4V4W_030 | 1/AA/672:677, 1/AA/713:725, 1/AA/732:734 | No text annotation | ||
J3_4V4W_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
J3_4V4W_018 | 1/AA/933:940, 1/AA/1343:1350, 1/AA/1372:1384 | No text annotation | ||
J3_4V4W_031 | 1/AA/955:962, 1/AA/973:985, 1/AA/1220:1225 | No text annotation | homologous J3_6CZR_062 NA | |
J3_4V4W_005 | 1/AA/1063:1069, 1/AA/1106:1113, 1/AA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
J3_4V4W_006 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
J3_4V4W_032 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
J3_4V4W_021 | 1/B0/32:35, 1/B0/445:461, 1/B0/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_4V4W_033 | 1/B0/292:302, 1/B0/315:325, 1/B0/337:347 | No text annotation | ||
J3_4V4W_023 | 1/B0/601:604, 1/B0/624:638, 1/B0/650:656 | No text annotation | ||
J3_4V4W_007 | 1/B0/683:689, 1/B0/773:778, 1/B0/786:794 | No text annotation | ||
J3_4V4W_008 | 1/B0/697:700, 1/B0/732:737, 1/B0/759:765 | No text annotation | ||
J3_4V4W_034 | 1/B0/1055:1057, 1/B0/1081:1087, 1/B0/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
J3_4V4W_010 | 1/B0/1298:1303, 1/B0/1625:1628, 1/B0/1638:1642 | No text annotation | geometric J3_4V9F_005 J3_32852.6 | |
J3_4V4W_011 | 1/B0/1306:1309, 1/B0/1605:1611, 1/B0/1620:1622 | No text annotation | geometric J3_4V9F_006 J3_19545.2 | |
J3_4V4W_025 | 1/B0/1344:1350, 1/B0/1381:1386, 1/B0/1401:1403 | No text annotation | ||
J3_4V4W_035 | 1/B0/1444:1446, 1/B0/1465:1468, 1/B0/1523:1547 | No text annotation | ||
J3_4V4W_013 | 1/B0/2089:2093, 1/B0/2196:2200, 1/B0/2223:2230 | No text annotation | ||
J3_4V4W_027 | 1/B0/2285:2289, 1/B0/2343:2347, 1/B0/2370:2383 | No text annotation | ||
J3_4V4W_014 | 1/B0/2295:2297, 1/B0/2321:2323, 1/B0/2332:2337 | No text annotation | homologous J3_4WF9_008 J3_61124.2 | |
J3_4V4W_015 | 1/B0/2516:2521, 1/B0/2544:2549, 1/B0/2559:2568 | No text annotation | ||
J3_4V4W_016 | 1/B0/2812:2815, 1/B0/2831:2836, 1/B0/2882:2888 | No text annotation | ||
J3_4V4W_036 | 1/B9/10:28, 1/B9/56:79, 1/B9/97:110 | No text annotation | ||
J4_4V4W_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
J4_4V4W_002 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
J4_4V4W_014 | 1/AA/569:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:881 | No text annotation | ||
J4_4V4W_004 | 1/AA/943:946, 1/AA/1235:1253, 1/AA/1284:1308, 1/AA/1329:1340 | No text annotation | ||
J4_4V4W_005 | 1/AA/990:1007, 1/AA/1022:1028, 1/AA/1033:1047, 1/AA/1210:1215 | No text annotation | ||
J4_4V4W_006 | 1/AU/7:10, 1/AU/25:27, 1/AU/43:49, 1/AU/65:66 | No text annotation | homologous J4_7EQJ_002 J4_70449.28 | |
J4_4V4W_007 | 1/AV/7:10, 1/AV/25:27, 1/AV/43:49, 1/AV/65:66 | No text annotation | homologous J4_6UFG_001 J4_70449.28 | |
J4_4V4W_008 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | No text annotation | homologous J4_7EQJ_002 J4_70449.28 | |
J4_4V4W_009 | 1/B0/268:271, 1/B0/366:375, 1/B0/399:406, 1/B0/421:424 | No text annotation | ||
J4_4V4W_010 | 1/B0/1310:1314, 1/B0/1338:1343, 1/B0/1404:1405, 1/B0/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
J4_4V4W_011 | 1/B0/1772:1776, 1/B0/1788:1792, 1/B0/1827:1831, 1/B0/1974:1979 | No text annotation | ||
J4_4V4W_015 | 1/B0/1833:1845, 1/B0/1895:1908, 1/B0/1922:1945, 1/B0/1961:1972 | No text annotation | ||
J4_4V4W_016 | 1/B0/2643:2646, 1/B0/2674:2679, 1/B0/2728:2736, 1/B0/2768:2771 | No text annotation | ||
J5_4V4W_001 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
J5_4V4W_007 | 1/B0/584:590, 1/B0/667:672, 1/B0/808:812, 1/B0/1195:1202, 1/B0/1243:1256 | No text annotation | ||
J5_4V4W_003 | 1/B0/1666:1683, 1/B0/1705:1707, 1/B0/1751:1752, 1/B0/1756:1764, 1/B0/1988:1994 | No text annotation | ||
J5_4V4W_004 | 1/B0/1669:1683, 1/B0/1705:1707, 1/B0/1751:1752, 1/B0/1756:1764, 1/B0/1988:1993 | No text annotation | ||
J5_4V4W_008 | 1/B0/2057:2071, 1/B0/2438:2461, 1/B0/2489:2523, 1/B0/2540:2588, 1/B0/2606:2611 | No text annotation | ||
J7_4V4W_003 | 1/B0/817:822, 1/B0/835:855, 1/B0/922:946, 1/B0/971:976, 1/B0/987:991, 1/B0/1163:1166, 1/B0/1183:1190 | No text annotation | ||
J7_4V4W_004 | 1/B0/2072:2093, 1/B0/2196:2200, 1/B0/2223:2246, 1/B0/2258:2259, 1/B0/2281:2284, 1/B0/2384:2398, 1/B0/2418:2437 | No text annotation | ||
J9_4V4W_002 | 1/B0/45:57, 1/B0/70:76, 1/B0/110:122, 1/B0/129:150, 1/B0/176:183, 1/B0/214:224, 1/B0/231:235, 1/B0/262:266, 1/B0/426:433 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V4W_017 | No text annotation | ||
J3_4V4W_004 | No text annotation | ||
J3_4V4W_019 | No text annotation | ||
J3_4V4W_020 | No text annotation | ||
J3_4V4W_022 | No text annotation | ||
J3_4V4W_024 | No text annotation | ||
J3_4V4W_009 | No text annotation | ||
J3_4V4W_012 | No text annotation | ||
J3_4V4W_026 | No text annotation | ||
J3_4V4W_028 | No text annotation | ||
J3_4V4W_029 | No text annotation | ||
J4_4V4W_003 | No text annotation | ||
J4_4V4W_012 | No text annotation | ||
J4_4V4W_013 | No text annotation | ||
J5_4V4W_002 | No text annotation | ||
J5_4V4W_005 | No text annotation | ||
J5_4V4W_006 | No text annotation | ||
J7_4V4W_001 | No text annotation | ||
J7_4V4W_002 | No text annotation | ||
J9_4V4W_001 | No text annotation |
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