4V4W Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V4W_001 | No text annotation | ||
| HL_4V4W_002 | No text annotation | ||
| HL_4V4W_107 | GNRA with extra near cWW | ||
| HL_4V4W_003 | GNRA | ||
| HL_4V4W_004 | No text annotation | ||
| HL_4V4W_108 | No text annotation | ||
| HL_4V4W_120 | No text annotation | ||
| HL_4V4W_005 | No text annotation | ||
| HL_4V4W_006 | GNRA related | ||
| HL_4V4W_007 | GNRA | ||
| HL_4V4W_008 | No text annotation | ||
| HL_4V4W_009 | UNCG | ||
| HL_4V4W_010 | GNRA | ||
| HL_4V4W_011 | UNCG | ||
| HL_4V4W_012 | GNRA | ||
| HL_4V4W_013 | No text annotation | ||
| HL_4V4W_014 | GNRA-like with tWH | ||
| HL_4V4W_015 | No text annotation | ||
| HL_4V4W_016 | GNRA | ||
| HL_4V4W_017 | No text annotation | ||
| HL_4V4W_018 | No text annotation | ||
| HL_4V4W_121 | Mini UNCG | ||
| HL_4V4W_019 | GNRA | ||
| HL_4V4W_020 | GNRA | ||
| HL_4V4W_021 | No text annotation | ||
| HL_4V4W_022 | No text annotation | ||
| HL_4V4W_109 | GNRA | ||
| HL_4V4W_023 | No text annotation | ||
| HL_4V4W_024 | GNRA | ||
| HL_4V4W_110 | No text annotation | ||
| HL_4V4W_025 | T-loop related | ||
| HL_4V4W_026 | No text annotation | ||
| HL_4V4W_027 | GNRA | ||
| HL_4V4W_028 | No text annotation | ||
| HL_4V4W_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V4W_030 | No text annotation | ||
| HL_4V4W_031 | UNCG | ||
| HL_4V4W_032 | GNRA variation | ||
| HL_4V4W_033 | tRNA D-loop | ||
| HL_4V4W_034 | No text annotation | ||
| HL_4V4W_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V4W_036 | No text annotation | ||
| HL_4V4W_037 | No text annotation | ||
| HL_4V4W_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V4W_039 | tRNA D-loop | ||
| HL_4V4W_040 | No text annotation | ||
| HL_4V4W_041 | No text annotation | ||
| HL_4V4W_111 | No text annotation | ||
| HL_4V4W_042 | No text annotation | ||
| HL_4V4W_043 | No text annotation | ||
| HL_4V4W_112 | No text annotation | ||
| HL_4V4W_044 | No text annotation | ||
| HL_4V4W_045 | No text annotation | ||
| HL_4V4W_046 | No text annotation | ||
| HL_4V4W_047 | No text annotation | ||
| HL_4V4W_048 | No text annotation | ||
| HL_4V4W_049 | T-loop with 2 stacked bulged bases | ||
| HL_4V4W_050 | T-loop with unstacked turn | ||
| HL_4V4W_051 | No text annotation | ||
| HL_4V4W_052 | No text annotation | ||
| HL_4V4W_053 | GNRA | ||
| HL_4V4W_054 | No text annotation | ||
| HL_4V4W_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V4W_056 | No text annotation | ||
| HL_4V4W_057 | GNRA with extra cWW | ||
| HL_4V4W_058 | No text annotation | ||
| HL_4V4W_059 | GNRA wlth tandem sheared | ||
| HL_4V4W_060 | No text annotation | ||
| HL_4V4W_061 | UNCG | ||
| HL_4V4W_062 | No text annotation | ||
| HL_4V4W_113 | No text annotation | ||
| HL_4V4W_063 | No text annotation | ||
| HL_4V4W_114 | No text annotation | ||
| HL_4V4W_064 | No text annotation | ||
| HL_4V4W_122 | No text annotation | ||
| HL_4V4W_065 | No text annotation | ||
| HL_4V4W_066 | No text annotation | ||
| HL_4V4W_067 | GNRA wlth tandem sheared | ||
| HL_4V4W_068 | Anticodon loop related | ||
| HL_4V4W_123 | GNRA | ||
| HL_4V4W_069 | GNRA | ||
| HL_4V4W_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V4W_071 | No text annotation | ||
| HL_4V4W_115 | Pseudoknot geometry with 3' bulge | ||
| HL_4V4W_072 | Externally structured | ||
| HL_4V4W_073 | No text annotation | ||
| HL_4V4W_074 | No text annotation | ||
| HL_4V4W_075 | No text annotation | ||
| HL_4V4W_076 | No text annotation | ||
| HL_4V4W_077 | GNRA with extra cWW | ||
| HL_4V4W_116 | No text annotation | ||
| HL_4V4W_078 | UNCG | ||
| HL_4V4W_079 | No text annotation | ||
| HL_4V4W_080 | No text annotation | ||
| HL_4V4W_081 | No text annotation | ||
| HL_4V4W_082 | GNRA | ||
| HL_4V4W_083 | No text annotation | ||
| HL_4V4W_084 | No text annotation | ||
| HL_4V4W_117 | tRNA anticodon loop | ||
| HL_4V4W_085 | No text annotation | ||
| HL_4V4W_086 | No text annotation | ||
| HL_4V4W_087 | No text annotation | ||
| HL_4V4W_088 | GNRA | ||
| HL_4V4W_089 | No text annotation | ||
| HL_4V4W_090 | No text annotation | ||
| HL_4V4W_091 | No text annotation | ||
| HL_4V4W_092 | Pseudoknot geometry | ||
| HL_4V4W_093 | No text annotation | ||
| HL_4V4W_124 | No text annotation | ||
| HL_4V4W_094 | GNRA | ||
| HL_4V4W_095 | No text annotation | ||
| HL_4V4W_118 | No text annotation | ||
| HL_4V4W_096 | No text annotation | ||
| HL_4V4W_097 | No text annotation | ||
| HL_4V4W_098 | No text annotation | ||
| HL_4V4W_099 | GNRA | ||
| HL_4V4W_100 | GNRA | ||
| HL_4V4W_101 | Ribsomal LSU H95 | ||
| HL_4V4W_102 | No text annotation | ||
| HL_4V4W_103 | No text annotation | ||
| HL_4V4W_119 | No text annotation | ||
| HL_4V4W_104 | No text annotation | ||
| HL_4V4W_105 | No text annotation | ||
| HL_4V4W_125 | No text annotation | ||
| HL_4V4W_106 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V4W_001 | Isolated non-canonical cWW pair | ||
| IL_4V4W_112 | Single bulged A | ||
| IL_4V4W_002 | Minor groove platform | ||
| IL_4V4W_003 | Multiple bulged bases | ||
| IL_4V4W_113 | Isolated non-canonical cWW pair | ||
| IL_4V4W_004 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_005 | Isolated non-canonical cWW pair | ||
| IL_4V4W_006 | No text annotation | ||
| IL_4V4W_007 | Isolated non-canonical cWW pair | ||
| IL_4V4W_008 | tWH-tWH-tHW-tHW | ||
| IL_4V4W_009 | Kink-turn with non-sequential stacking | ||
| IL_4V4W_114 | No text annotation | ||
| IL_4V4W_010 | No text annotation | ||
| IL_4V4W_115 | No text annotation | ||
| IL_4V4W_011 | C-loop | ||
| IL_4V4W_012 | C-loop | ||
| IL_4V4W_116 | No text annotation | ||
| IL_4V4W_013 | Single bulged G, near cWW | ||
| IL_4V4W_117 | No text annotation | ||
| IL_4V4W_014 | No text annotation | ||
| IL_4V4W_154 | No text annotation | ||
| IL_4V4W_155 | No text annotation | ||
| IL_4V4W_118 | No text annotation | ||
| IL_4V4W_015 | SSU/LSU pseudoknot | ||
| IL_4V4W_119 | Isolated non-canonical cWW pair | ||
| IL_4V4W_016 | Kink-turn related | ||
| IL_4V4W_017 | tSH-tHW-tHS-cWW | ||
| IL_4V4W_156 | tSH-tHW-tHS | ||
| IL_4V4W_120 | No text annotation | ||
| IL_4V4W_018 | Major groove platform | ||
| IL_4V4W_019 | Major groove minor groove platform; mini C-loop | ||
| IL_4V4W_020 | No text annotation | ||
| IL_4V4W_157 | No text annotation | ||
| IL_4V4W_021 | No text annotation | ||
| IL_4V4W_121 | No text annotation | ||
| IL_4V4W_022 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_023 | No text annotation | ||
| IL_4V4W_122 | Kink-turn | ||
| IL_4V4W_024 | Left turn | ||
| IL_4V4W_025 | tSH-tHW-tHS | ||
| IL_4V4W_026 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V4W_027 | Single bulged A | ||
| IL_4V4W_123 | Isolated non-canonical cWW pair | ||
| IL_4V4W_028 | Single bulged G | ||
| IL_4V4W_029 | No text annotation | ||
| IL_4V4W_124 | No text annotation | ||
| IL_4V4W_158 | No text annotation | ||
| IL_4V4W_030 | Minor groove platform | ||
| IL_4V4W_031 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_032 | Isolated non-canonical cWW pair | ||
| IL_4V4W_125 | Single bulged U | ||
| IL_4V4W_033 | Isolated cWS basepair | ||
| IL_4V4W_034 | Minor groove platform | ||
| IL_4V4W_035 | Single bulged A | ||
| IL_4V4W_126 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_036 | Isolated non-canonical cWW pair | ||
| IL_4V4W_037 | No text annotation | ||
| IL_4V4W_127 | No text annotation | ||
| IL_4V4W_038 | Minor groove platform | ||
| IL_4V4W_039 | 180 degree turn | ||
| IL_4V4W_040 | Double sheared with non-canonical cWW | ||
| IL_4V4W_041 | No text annotation | ||
| IL_4V4W_128 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_042 | Isolated non-canonical cWW pair | ||
| IL_4V4W_043 | Decoding loop related | ||
| IL_4V4W_129 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_044 | Isolated non-canonical cWW pair | ||
| IL_4V4W_045 | Double sheared | ||
| IL_4V4W_130 | Double sheared with near cWW | ||
| IL_4V4W_046 | Triple sheared related | ||
| IL_4V4W_047 | No text annotation | ||
| IL_4V4W_048 | Triple sheared with non-canonical cWW | ||
| IL_4V4W_049 | No text annotation | ||
| IL_4V4W_050 | Single bulged A | ||
| IL_4V4W_051 | Major groove platform with extra cWW | ||
| IL_4V4W_052 | Kink-turn | ||
| IL_4V4W_053 | Single stack bend | ||
| IL_4V4W_054 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V4W_055 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V4W_131 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V4W_056 | No text annotation | ||
| IL_4V4W_159 | No text annotation | ||
| IL_4V4W_057 | No text annotation | ||
| IL_4V4W_058 | Isolated non-canonical cWW pair | ||
| IL_4V4W_059 | No text annotation | ||
| IL_4V4W_060 | No text annotation | ||
| IL_4V4W_061 | No text annotation | ||
| IL_4V4W_132 | No text annotation | ||
| IL_4V4W_160 | No text annotation | ||
| IL_4V4W_062 | No text annotation | ||
| IL_4V4W_133 | Isolated non-canonical cWW pair | ||
| IL_4V4W_063 | UAA/GAN with extra cWW | ||
| IL_4V4W_134 | UAA/GAN | ||
| IL_4V4W_135 | No text annotation | ||
| IL_4V4W_064 | No text annotation | ||
| IL_4V4W_136 | No text annotation | ||
| IL_4V4W_065 | No text annotation | ||
| IL_4V4W_161 | Kink-turn related | ||
| IL_4V4W_137 | No text annotation | ||
| IL_4V4W_066 | Isolated non-canonical cWW pair | ||
| IL_4V4W_138 | No text annotation | ||
| IL_4V4W_067 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_139 | No text annotation | ||
| IL_4V4W_068 | No text annotation | ||
| IL_4V4W_140 | No text annotation | ||
| IL_4V4W_069 | No text annotation | ||
| IL_4V4W_141 | Major groove platform | ||
| IL_4V4W_070 | Major groove platform with extra cWW | ||
| IL_4V4W_071 | No text annotation | ||
| IL_4V4W_072 | Kink-turn | ||
| IL_4V4W_073 | Major groove platform; stack outside cWW | ||
| IL_4V4W_074 | C-loop | ||
| IL_4V4W_075 | UAA/GAN with extra cWW | ||
| IL_4V4W_076 | Isolated non-canonical cWW pair | ||
| IL_4V4W_162 | No text annotation | ||
| IL_4V4W_142 | No text annotation | ||
| IL_4V4W_077 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_143 | No text annotation | ||
| IL_4V4W_144 | No text annotation | ||
| IL_4V4W_078 | No text annotation | ||
| IL_4V4W_145 | No text annotation | ||
| IL_4V4W_079 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_146 | Partly complementary | ||
| IL_4V4W_080 | tSH-tHW-tHS | ||
| IL_4V4W_081 | Single stack bend | ||
| IL_4V4W_082 | No text annotation | ||
| IL_4V4W_147 | No text annotation | ||
| IL_4V4W_083 | No text annotation | ||
| IL_4V4W_163 | No text annotation | ||
| IL_4V4W_148 | No text annotation | ||
| IL_4V4W_084 | No text annotation | ||
| IL_4V4W_085 | Major groove platform; stack outside cWW | ||
| IL_4V4W_086 | Intercalated tWH | ||
| IL_4V4W_087 | tSH-tSH-tHH-tHS | ||
| IL_4V4W_149 | Isolated non-canonical cWW pair | ||
| IL_4V4W_088 | Single bulged A | ||
| IL_4V4W_089 | Kink-turn related | ||
| IL_4V4W_150 | No text annotation | ||
| IL_4V4W_151 | No text annotation | ||
| IL_4V4W_090 | No text annotation | ||
| IL_4V4W_091 | No text annotation | ||
| IL_4V4W_092 | No text annotation | ||
| IL_4V4W_093 | Isolated non-canonical cWW pair | ||
| IL_4V4W_094 | No text annotation | ||
| IL_4V4W_095 | Isolated tHS basepair with bulges | ||
| IL_4V4W_096 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_097 | No text annotation | ||
| IL_4V4W_098 | Double sheared with non-canonical cWW | ||
| IL_4V4W_099 | Single stack bend with SAM intercalation | ||
| IL_4V4W_100 | No text annotation | ||
| IL_4V4W_101 | Single bulged A | ||
| IL_4V4W_152 | No text annotation | ||
| IL_4V4W_102 | No text annotation | ||
| IL_4V4W_103 | C-loop | ||
| IL_4V4W_104 | UAA/GAN variation | ||
| IL_4V4W_105 | Multiple bulged bases | ||
| IL_4V4W_153 | Isolated non-canonical cWW pair | ||
| IL_4V4W_106 | UAA/GAN with extra cWW | ||
| IL_4V4W_164 | Major groove intercalation | ||
| IL_4V4W_107 | Isolated non-canonical cWW with bulges | ||
| IL_4V4W_108 | Tandem non-canonical cWW pairs | ||
| IL_4V4W_109 | tHS double platform | ||
| IL_4V4W_110 | No text annotation | ||
| IL_4V4W_165 | No text annotation | ||
| IL_4V4W_111 | 8-nt loop receptor |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V4W_001 | No text annotation | ||
| J3_4V4W_002 | No text annotation | ||
| J3_4V4W_030 | No text annotation | ||
| J3_4V4W_017 | No text annotation | ||
| J3_4V4W_003 | No text annotation | ||
| J3_4V4W_018 | No text annotation | ||
| J3_4V4W_004 | No text annotation | ||
| J3_4V4W_019 | No text annotation | ||
| J3_4V4W_031 | No text annotation | ||
| J3_4V4W_005 | No text annotation | ||
| J3_4V4W_006 | No text annotation | ||
| J3_4V4W_020 | No text annotation | ||
| J3_4V4W_032 | No text annotation | ||
| J3_4V4W_021 | No text annotation | ||
| J3_4V4W_022 | No text annotation | ||
| J3_4V4W_033 | No text annotation | ||
| J3_4V4W_023 | No text annotation | ||
| J3_4V4W_024 | No text annotation | ||
| J3_4V4W_007 | No text annotation | ||
| J3_4V4W_008 | No text annotation | ||
| J3_4V4W_034 | No text annotation | ||
| J3_4V4W_009 | No text annotation | ||
| J3_4V4W_010 | No text annotation | ||
| J3_4V4W_011 | No text annotation | ||
| J3_4V4W_025 | No text annotation | ||
| J3_4V4W_012 | No text annotation | ||
| J3_4V4W_026 | No text annotation | ||
| J3_4V4W_035 | No text annotation | ||
| J3_4V4W_013 | No text annotation | ||
| J3_4V4W_027 | No text annotation | ||
| J3_4V4W_014 | No text annotation | ||
| J3_4V4W_015 | No text annotation | ||
| J3_4V4W_016 | No text annotation | ||
| J3_4V4W_028 | No text annotation | ||
| J3_4V4W_036 | No text annotation | ||
| J3_4V4W_029 | No text annotation | ||
| J4_4V4W_001 | No text annotation | ||
| J4_4V4W_002 | No text annotation | ||
| J4_4V4W_014 | No text annotation | ||
| J4_4V4W_003 | No text annotation | ||
| J4_4V4W_004 | No text annotation | ||
| J4_4V4W_005 | No text annotation | ||
| J4_4V4W_006 | tRNA junction | ||
| J4_4V4W_007 | tRNA junction | ||
| J4_4V4W_008 | tRNA junction | ||
| J4_4V4W_009 | No text annotation | ||
| J4_4V4W_010 | No text annotation | ||
| J4_4V4W_011 | No text annotation | ||
| J4_4V4W_015 | No text annotation | ||
| J4_4V4W_012 | No text annotation | ||
| J4_4V4W_016 | No text annotation | ||
| J4_4V4W_013 | No text annotation | ||
| J5_4V4W_001 | No text annotation | ||
| J5_4V4W_007 | No text annotation | ||
| J5_4V4W_002 | No text annotation | ||
| J5_4V4W_003 | No text annotation | ||
| J5_4V4W_004 | No text annotation | ||
| J5_4V4W_005 | No text annotation | ||
| J5_4V4W_006 | No text annotation | ||
| J5_4V4W_008 | No text annotation | ||
| J7_4V4W_003 | No text annotation | ||
| J7_4V4W_001 | No text annotation | ||
| J7_4V4W_004 | No text annotation | ||
| J7_4V4W_002 | No text annotation | ||
| J9_4V4W_002 | No text annotation | ||
| J9_4V4W_001 | No text annotation |
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