HL_4V4W_011

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V4W|1|AA|U|421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1132

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4V4W|1|AA|C|419
4V4W|1|AA|U|420
4V4W|1|AA|U|421
4V4W|1|AA|C|422
4V4W|1|AA|G|423
4V4W|1|AA|G|424

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal subunit protein S3

Chain AD

30S ribosomal subunit protein S4