HL_4V4W_014

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1503

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4W|1|AA|G|617
4V4W|1|AA|C|618
4V4W|1|AA|U|619
4V4W|1|AA|C|620
4V4W|1|AA|A|621
4V4W|1|AA|A|622
4V4W|1|AA|C|623

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal subunit protein S4

Chain AP

30S ribosomal subunit protein S16