HL_4V4W_028

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

4V4W|1|AA|C|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_028 not in the Motif Atlas

Homologous match to HL_6CZR_099

Geometric discrepancy: 0.5952

The information below is about HL_6CZR_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|AA|C|1265
4V4W|1|AA|G|1266
4V4W|1|AA|C|1267
4V4W|1|AA|G|1268
4V4W|1|AA|A|1269
4V4W|1|AA|G|1270

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal subunit protein S13