HL_4V4W_030
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 4V4W|1|AA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4W_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.5286
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V4W|1|AA|G|1356
4V4W|1|AA|A|1357
4V4W|1|AA|U|1358
4V4W|1|AA|C|1359
4V4W|1|AA|A|1360
4V4W|1|AA|G|1361
4V4W|1|AA|A|1362
4V4W|1|AA|A|1363
4V4W|1|AA|U|1364
4V4W|1|AA|G|1365
4V4W|1|AA|C|1366
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AI
- 30S ribosomal subunit protein S9
- Chain AJ
- 30S ribosomal subunit protein S10
- Chain AN
- 30S ribosomal subunit protein S14
- Chain AS
- 30S ribosomal subunit protein S19
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