HL_4V4W_036
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CAGUUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 4V4W|1|AV|U|16, 4V4W|1|AV|U|17, 4V4W|1|AV|G|18, 4V4W|1|AV|G|19, 4V4W|1|AV|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4W_036 not in the Motif Atlas
- Homologous match to HL_3WFS_001
- Geometric discrepancy: 0.1719
- The information below is about HL_3WFS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4W|1|AV|C|13
4V4W|1|AV|A|14
4V4W|1|AV|G|15
4V4W|1|AV|U|16
4V4W|1|AV|U|17
4V4W|1|AV|G|18
4V4W|1|AV|G|19
4V4W|1|AV|G|20
4V4W|1|AV|A|21
4V4W|1|AV|G|22
Current chains
- Chain AV
- tRNA
Nearby chains
- Chain B0
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 50S ribosomal protein L5
- Chain BU
- 50S ribosomal protein L27
Coloring options: