HL_4V4W_039

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

4V4W|1|AW|U|16, 4V4W|1|AW|U|17, 4V4W|1|AW|G|18, 4V4W|1|AW|G|19, 4V4W|1|AW|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_039 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1575

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V4W|1|AW|C|13
4V4W|1|AW|A|14
4V4W|1|AW|G|15
4V4W|1|AW|U|16
4V4W|1|AW|U|17
4V4W|1|AW|G|18
4V4W|1|AW|G|19
4V4W|1|AW|G|20
4V4W|1|AW|A|21
4V4W|1|AW|G|22

Current chains

Chain AW

tRNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA