3D structure

PDB id
4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GGAAC
Length
5 nucleotides
Bulged bases
4V4W|1|B0|A|125, 4V4W|1|B0|A|126
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4W_044 not in the Motif Atlas
Homologous match to HL_4WF9_003
Geometric discrepancy: 0.2323
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

4V4W|1|B0|G|123
4V4W|1|B0|G|124
4V4W|1|B0|A|125
4V4W|1|B0|A|126
4V4W|1|B0|C|128

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain BR
50S ribosomal protein L23

Coloring options:


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