HL_4V4W_048

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_048 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.193

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

13

Unit IDs

4V4W|1|B0|C|246
4V4W|1|B0|G|247
4V4W|1|B0|G|248
4V4W|1|B0|C|249
4V4W|1|B0|G|250
4V4W|1|B0|A|251
4V4W|1|B0|G|252

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BJ

50S ribosomal protein L15