HL_4V4W_052

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V4W|1|B0|G|411, 4V4W|1|B0|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_052 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.5624

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V4W|1|B0|G|410
4V4W|1|B0|G|411
4V4W|1|B0|A|412
4V4W|1|B0|C|413
4V4W|1|B0|C|414
4V4W|1|B0|A|415
4V4W|1|B0|U|416
4V4W|1|B0|C|417

Current chains

Chain B0

23S ribosomal RNA

Nearby chains