HL_4V4W_054

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

4V4W|1|B0|C|544, 4V4W|1|B0|U|545, 4V4W|1|B0|U|546, 4V4W|1|B0|A|547, 4V4W|1|B0|U|548, 4V4W|1|B0|G|549, 4V4W|1|B0|C|550

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|C|543
4V4W|1|B0|C|544
4V4W|1|B0|U|545
4V4W|1|B0|U|546
4V4W|1|B0|A|547
4V4W|1|B0|U|548
4V4W|1|B0|G|549
4V4W|1|B0|C|550
4V4W|1|B0|G|551

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L13