HL_4V4W_060

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

4V4W|1|B0|U|747, 4V4W|1|B0|A|749, 4V4W|1|B0|A|751, 4V4W|1|B0|A|752

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_060 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2514

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4W|1|B0|U|744
4V4W|1|B0|G|745
4V4W|1|B0|U|746
4V4W|1|B0|U|747
4V4W|1|B0|G|748
4V4W|1|B0|A|749
4V4W|1|B0|A|750
4V4W|1|B0|A|751
4V4W|1|B0|A|752
4V4W|1|B0|A|753

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22