HL_4V4W_061

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V4W|1|B0|A|781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_061 not in the Motif Atlas

Geometric match to HL_6JQ6_004

Geometric discrepancy: 0.2874

The information below is about HL_6JQ6_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V4W|1|B0|U|779
4V4W|1|B0|G|780
4V4W|1|B0|A|781
4V4W|1|B0|A|782
4V4W|1|B0|A|783
4V4W|1|B0|G|784
4V4W|1|B0|G|785

Current chains

Chain B0

23S ribosomal RNA

Nearby chains