HL_4V4W_075

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGUCAGAAAAUCUACC

Length

17 nucleotides

Bulged bases

4V4W|1|B0|U|1489, 4V4W|1|B0|C|1490, 4V4W|1|B0|A|1491, 4V4W|1|B0|A|1493, 4V4W|1|B0|A|1494, 4V4W|1|B0|U|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1486
4V4W|1|B0|G|1487
4V4W|1|B0|G|1488
4V4W|1|B0|U|1489
4V4W|1|B0|C|1490
4V4W|1|B0|A|1491
4V4W|1|B0|G|1492
4V4W|1|B0|A|1493
4V4W|1|B0|A|1494
4V4W|1|B0|A|1495
4V4W|1|B0|A|1496
4V4W|1|B0|U|1497
4V4W|1|B0|C|1498
4V4W|1|B0|U|1499
4V4W|1|B0|A|1500
4V4W|1|B0|C|1501
4V4W|1|B0|C|1502

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L2