HL_4V4W_083

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUGCAAAG

Length

8 nucleotides

Bulged bases

4V4W|1|B0|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_083 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2687

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V4W|1|B0|U|1864
4V4W|1|B0|U|1865
4V4W|1|B0|G|1869
4V4W|1|B0|C|1870
4V4W|1|B0|A|1871
4V4W|1|B0|A|1872
4V4W|1|B0|A|1877
4V4W|1|B0|G|1878

Current chains

Chain B0

23S ribosomal RNA

Nearby chains