HL_4V4W_087
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- AUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGGCCUUGAAAUACCACCCUUU
- Length
- 75 nucleotides
- Bulged bases
- 4V4W|1|B0|G|2112, 4V4W|1|B0|U|2113, 4V4W|1|B0|A|2114, 4V4W|1|B0|G|2116, 4V4W|1|B0|G|2127, 4V4W|1|B0|C|2129, 4V4W|1|B0|U|2131, 4V4W|1|B0|C|2143, 4V4W|1|B0|G|2144, 4V4W|1|B0|C|2145, 4V4W|1|B0|C|2146, 4V4W|1|B0|A|2147, 4V4W|1|B0|G|2148, 4V4W|1|B0|C|2150, 4V4W|1|B0|G|2159, 4V4W|1|B0|U|2166, 4V4W|1|B0|A|2171, 4V4W|1|B0|C|2174, 4V4W|1|B0|C|2175, 4V4W|1|B0|C|2178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4W|1|B0|A|2108
4V4W|1|B0|U|2109
4V4W|1|B0|G|2110
4V4W|1|B0|U|2111
4V4W|1|B0|G|2112
4V4W|1|B0|U|2113
4V4W|1|B0|A|2114
4V4W|1|B0|G|2115
4V4W|1|B0|G|2116
4V4W|1|B0|A|2117
4V4W|1|B0|U|2118
4V4W|1|B0|A|2119
4V4W|1|B0|G|2120
4V4W|1|B0|G|2121
4V4W|1|B0|U|2122
4V4W|1|B0|G|2123
4V4W|1|B0|G|2124
4V4W|1|B0|G|2125
4V4W|1|B0|A|2126
4V4W|1|B0|G|2127
4V4W|1|B0|G|2128
4V4W|1|B0|C|2129
4V4W|1|B0|U|2130
4V4W|1|B0|U|2131
4V4W|1|B0|U|2132
4V4W|1|B0|G|2133
4V4W|1|B0|A|2134
4V4W|1|B0|A|2135
4V4W|1|B0|G|2136
4V4W|1|B0|U|2137
4V4W|1|B0|G|2138
4V4W|1|B0|U|2139
4V4W|1|B0|G|2140
4V4W|1|B0|G|2141
4V4W|1|B0|A|2142
4V4W|1|B0|C|2143
4V4W|1|B0|G|2144
4V4W|1|B0|C|2145
4V4W|1|B0|C|2146
4V4W|1|B0|A|2147
4V4W|1|B0|G|2148
4V4W|1|B0|U|2149
4V4W|1|B0|C|2150
4V4W|1|B0|U|2151
4V4W|1|B0|G|2152
4V4W|1|B0|C|2153
4V4W|1|B0|A|2154
4V4W|1|B0|U|2155
4V4W|1|B0|G|2156
4V4W|1|B0|G|2157
4V4W|1|B0|A|2158
4V4W|1|B0|G|2159
4V4W|1|B0|C|2160
4V4W|1|B0|C|2161
4V4W|1|B0|G|2162
4V4W|1|B0|G|2163
4V4W|1|B0|C|2164
4V4W|1|B0|C|2165
4V4W|1|B0|U|2166
4V4W|1|B0|U|2167
4V4W|1|B0|G|2168
4V4W|1|B0|A|2169
4V4W|1|B0|A|2170
4V4W|1|B0|A|2171
4V4W|1|B0|U|2172
4V4W|1|B0|A|2173
4V4W|1|B0|C|2174
4V4W|1|B0|C|2175
4V4W|1|B0|A|2176
4V4W|1|B0|C|2177
4V4W|1|B0|C|2178
4V4W|1|B0|C|2179
4V4W|1|B0|U|2180
4V4W|1|B0|U|2181
4V4W|1|B0|U|2182
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AK
- 30S ribosomal subunit protein S11
- Chain AW
- Transfer RNA; tRNA
- Chain B2
- 50S ribosomal protein L1
Coloring options: