HL_4V4W_090

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V4W|1|B0|A|2268, 4V4W|1|B0|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_090 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1822

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4W|1|B0|C|2264
4V4W|1|B0|U|2265
4V4W|1|B0|A|2266
4V4W|1|B0|A|2267
4V4W|1|B0|A|2268
4V4W|1|B0|G|2269
4V4W|1|B0|A|2270
4V4W|1|B0|G|2271
4V4W|1|B0|U|2272
4V4W|1|B0|A|2273
4V4W|1|B0|A|2274
4V4W|1|B0|C|2275
4V4W|1|B0|G|2276

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L16

Chain BU

50S ribosomal protein L27