HL_4V4W_092

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

4V4W|1|B0|A|2327

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_092 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.2708

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4V4W|1|B0|U|2324
4V4W|1|B0|G|2325
4V4W|1|B0|C|2326
4V4W|1|B0|A|2327
4V4W|1|B0|A|2328
4V4W|1|B0|U|2329
4V4W|1|B0|G|2330
4V4W|1|B0|G|2331

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L18

Chain BU

50S ribosomal protein L27