HL_4V4W_094

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_094 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.2113

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V4W|1|B0|C|2374
4V4W|1|B0|G|2375
4V4W|1|B0|A|2376
4V4W|1|B0|A|2377
4V4W|1|B0|A|2378
4V4W|1|B0|G|2379

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L33

Chain BM

50S ribosomal protein L18

Chain BU

50S ribosomal protein L27