HL_4V4W_098

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGCUGUUCGCC

Length

11 nucleotides

Bulged bases

4V4W|1|B0|G|2557

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_098 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2486

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

4V4W|1|B0|G|2549
4V4W|1|B0|G|2550
4V4W|1|B0|C|2551
4V4W|1|B0|U|2552
4V4W|1|B0|G|2553
4V4W|1|B0|U|2554
4V4W|1|B0|U|2555
4V4W|1|B0|C|2556
4V4W|1|B0|G|2557
4V4W|1|B0|C|2558
4V4W|1|B0|C|2559

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA

Chain BI

50S ribosomal protein L14