HL_4V4W_099

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_099 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.2803

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4W|1|B0|C|2594
4V4W|1|B0|G|2595
4V4W|1|B0|U|2596
4V4W|1|B0|G|2597
4V4W|1|B0|A|2598
4V4W|1|B0|G|2599

Current chains

Chain B0

23S ribosomal RNA

Nearby chains