HL_4V4W_102

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V4W|1|B0|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_102 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.142

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V4W|1|B0|C|2745
4V4W|1|B0|U|2746
4V4W|1|B0|G|2747
4V4W|1|B0|A|2748
4V4W|1|B0|A|2749
4V4W|1|B0|A|2750
4V4W|1|B0|G|2751
4V4W|1|B0|C|2752
4V4W|1|B0|A|2753
4V4W|1|B0|U|2754
4V4W|1|B0|C|2755
4V4W|1|B0|U|2756
4V4W|1|B0|A|2757
4V4W|1|B0|A|2758
4V4W|1|B0|G|2759

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L6