HL_4V4W_103

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4V4W|1|B0|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_103 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.2295

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4W|1|B0|G|2819
4V4W|1|B0|A|2820
4V4W|1|B0|A|2821
4V4W|1|B0|G|2822
4V4W|1|B0|A|2823
4V4W|1|B0|C|2824
4V4W|1|B0|G|2825
4V4W|1|B0|A|2826
4V4W|1|B0|C|2827

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BL

50S ribosomal protein L17