HL_4V4W_109

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_109 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1103

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4W|1|AA|A|1012
4V4W|1|AA|G|1013
4V4W|1|AA|A|1014
4V4W|1|AA|G|1015
4V4W|1|AA|A|1016
4V4W|1|AA|U|1017

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal subunit protein S14

Chain AS

30S ribosomal subunit protein S19