HL_4V4W_112

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

4V4W|1|B0|A|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_112 not in the Motif Atlas

Homologous match to HL_9DFE_002

Geometric discrepancy: 0.5788

The information below is about HL_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77600.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4W|1|B0|U|87
4V4W|1|B0|G|88
4V4W|1|B0|A|89
4V4W|1|B0|U|90
4V4W|1|B0|A|91
4V4W|1|B0|U|92
4V4W|1|B0|G|93
4V4W|1|B0|A|94
4V4W|1|B0|A|95

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L24

Chain BW

50S ribosomal protein L29