HL_4V4W_114

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGCGGGUGUAACGUCCGUC

Length

19 nucleotides

Bulged bases

4V4W|1|B0|U|958, 4V4W|1|B0|A|959, 4V4W|1|B0|A|960, 4V4W|1|B0|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|949
4V4W|1|B0|G|950
4V4W|1|B0|C|951
4V4W|1|B0|G|952
4V4W|1|B0|G|953
4V4W|1|B0|G|954
4V4W|1|B0|U|955
4V4W|1|B0|G|956
4V4W|1|B0|U|958
4V4W|1|B0|A|959
4V4W|1|B0|A|960
4V4W|1|B0|C|961
4V4W|1|B0|G|962
4V4W|1|B0|U|963
4V4W|1|B0|C|964
4V4W|1|B0|C|965
4V4W|1|B0|G|966
4V4W|1|B0|U|967
4V4W|1|B0|C|968

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BK

50S ribosomal protein L16