HL_4V4W_122

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUAACG

Length

7 nucleotides

Bulged bases

4V4W|1|B0|U|958, 4V4W|1|B0|A|959, 4V4W|1|B0|A|960, 4V4W|1|B0|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_122 not in the Motif Atlas

Geometric match to HL_8CRE_038

Geometric discrepancy: 0.3284

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4W|1|B0|U|955
4V4W|1|B0|G|956
4V4W|1|B0|U|958
4V4W|1|B0|A|959
4V4W|1|B0|A|960
4V4W|1|B0|C|961
4V4W|1|B0|G|962

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BK

50S ribosomal protein L16