HL_4V4X_014

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.2245

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4X|1|AA|G|617
4V4X|1|AA|C|618
4V4X|1|AA|U|619
4V4X|1|AA|C|620
4V4X|1|AA|A|621
4V4X|1|AA|A|622
4V4X|1|AA|C|623

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AS

30S ribosomal protein S16