HL_4V4X_033

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

4V4X|1|AC|C|16, 4V4X|1|AC|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_033 not in the Motif Atlas

Homologous match to HL_7LYF_001

Geometric discrepancy: 0.3268

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V4X|1|AC|C|13
4V4X|1|AC|A|14
4V4X|1|AC|G|15
4V4X|1|AC|C|16
4V4X|1|AC|C|17
4V4X|1|AC|G|18
4V4X|1|AC|G|19
4V4X|1|AC|U|20
4V4X|1|AC|A|21
4V4X|1|AC|G|22

Current chains

Chain AC

tRNA fMET (unmodified bases)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein L5