3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
CAGCCGGUAG
Length
10 nucleotides
Bulged bases
4V4X|1|AC|C|16, 4V4X|1|AC|G|18
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4X_033 not in the Motif Atlas
Homologous match to HL_7LYF_001
Geometric discrepancy: 0.3268
The information below is about HL_7LYF_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

4V4X|1|AC|C|13
4V4X|1|AC|A|14
4V4X|1|AC|G|15
4V4X|1|AC|C|16
4V4X|1|AC|C|17
4V4X|1|AC|G|18
4V4X|1|AC|G|19
4V4X|1|AC|U|20
4V4X|1|AC|A|21
4V4X|1|AC|G|22

Current chains

Chain AC
tRNA fMET (unmodified bases)

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BG
50S ribosomal protein L5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1047 s