HL_4V4X_064

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V4X|1|BA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_064 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.2764

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V4X|1|BA|C|955
4V4X|1|BA|G|956
4V4X|1|BA|A|957
4V4X|1|BA|U|958
4V4X|1|BA|A|959
4V4X|1|BA|A|960
4V4X|1|BA|C|961
4V4X|1|BA|G|962

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L16