3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
UACCAAA
Length
7 nucleotides
Bulged bases
4V4X|1|BA|A|1780, 4V4X|1|BA|C|1781
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4X_082 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.1164
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.2
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

4V4X|1|BA|U|1779
4V4X|1|BA|A|1780
4V4X|1|BA|C|1781
4V4X|1|BA|C|1782
4V4X|1|BA|A|1783
4V4X|1|BA|A|1784
4V4X|1|BA|A|1785

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B6
50S ribosomal protein L34

Coloring options:


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