HL_4V4X_088

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

4V4X|1|BA|U|2144, 4V4X|1|BA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_088 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3335

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V4X|1|BA|C|2143
4V4X|1|BA|U|2144
4V4X|1|BA|C|2145
4V4X|1|BA|C|2146
4V4X|1|BA|G|2147
4V4X|1|BA|G|2148

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S11