HL_4V4X_091

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V4X|1|BA|A|2267, 4V4X|1|BA|A|2268, 4V4X|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4X_091 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.39

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4X|1|BA|C|2264
4V4X|1|BA|U|2265
4V4X|1|BA|A|2266
4V4X|1|BA|A|2267
4V4X|1|BA|A|2268
4V4X|1|BA|A|2269
4V4X|1|BA|G|2270
4V4X|1|BA|G|2271
4V4X|1|BA|U|2272
4V4X|1|BA|A|2273
4V4X|1|BA|A|2274
4V4X|1|BA|C|2275
4V4X|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L27