HL_4V4Y_033

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V4Y|1|AB|U|16, 4V4Y|1|AB|C|17, 4V4Y|1|AB|G|18, 4V4Y|1|AB|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_033 not in the Motif Atlas

Homologous match to HL_5HR7_004

Geometric discrepancy: 0.5247

The information below is about HL_5HR7_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4Y|1|AB|C|13
4V4Y|1|AB|A|14
4V4Y|1|AB|G|15
4V4Y|1|AB|U|16
4V4Y|1|AB|C|17
4V4Y|1|AB|G|18
4V4Y|1|AB|G|19
4V4Y|1|AB|U|20
4V4Y|1|AB|A|21
4V4Y|1|AB|G|22

Current chains

Chain AB

tRNA PHE (unmodified bases)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BY

50S ribosomal protein L25