HL_4V4Y_035
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 4V4Y|1|AB|C|56
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4Y_035 not in the Motif Atlas
- Homologous match to HL_4V9K_035
- Geometric discrepancy: 0.4665
- The information below is about HL_4V9K_035
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4V4Y|1|AB|G|53
4V4Y|1|AB|U|54
4V4Y|1|AB|U|55
4V4Y|1|AB|C|56
4V4Y|1|AB|G|57
4V4Y|1|AB|A|58
4V4Y|1|AB|U|59
4V4Y|1|AB|U|60
4V4Y|1|AB|C|61
Current chains
- Chain AB
- tRNA PHE (unmodified bases)
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 50S ribosomal protein L11
- Chain BP
- 50S ribosomal protein L16
- Chain BY
- 50S ribosomal protein L25
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