HL_4V4Y_046

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V4Y|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_046 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.2515

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4Y|1|BA|G|194
4V4Y|1|BA|A|195
4V4Y|1|BA|A|196
4V4Y|1|BA|A|197
4V4Y|1|BA|C|198
4V4Y|1|BA|A|199
4V4Y|1|BA|U|200
4V4Y|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L31

Chain BO

50S ribosomal protein L15