HL_4V4Y_047

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4V4Y|1|BA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_047 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.3016

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V4Y|1|BA|A|225
4V4Y|1|BA|G|226
4V4Y|1|BA|A|227
4V4Y|1|BA|A|228
4V4Y|1|BA|A|229
4V4Y|1|BA|U|230

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15