HL_4V4Y_048
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GCGGCGAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V4Y_048 not in the Motif Atlas
- Geometric match to HL_2ZZN_004
- Geometric discrepancy: 0.3391
- The information below is about HL_2ZZN_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_64640.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V4Y|1|BA|G|245
4V4Y|1|BA|C|246
4V4Y|1|BA|G|247
4V4Y|1|BA|G|248
4V4Y|1|BA|C|249
4V4Y|1|BA|G|250
4V4Y|1|BA|A|251
4V4Y|1|BA|G|252
4V4Y|1|BA|C|253
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- Transfer RNA; tRNA
- Chain B3
- 50S ribosomal protein L31
- Chain B7
- 50S ribosomal protein L35
- Chain BO
- 50S ribosomal protein L15
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