HL_4V4Y_072

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCCGCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_072 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3486

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4Y|1|BA|C|1221
4V4Y|1|BA|C|1222
4V4Y|1|BA|C|1223
4V4Y|1|BA|G|1224
4V4Y|1|BA|C|1225
4V4Y|1|BA|G|1226
4V4Y|1|BA|A|1227
4V4Y|1|BA|G|1228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BT

50S ribosomal protein L20

Chain BU

50S ribosomal protein L21