HL_4V4Y_073

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_073 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.2152

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V4Y|1|BA|G|1281
4V4Y|1|BA|U|1282
4V4Y|1|BA|G|1283
4V4Y|1|BA|A|1284
4V4Y|1|BA|G|1285
4V4Y|1|BA|A|1286
4V4Y|1|BA|A|1287
4V4Y|1|BA|U|1288
4V4Y|1|BA|C|1289

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BQ

50S ribosomal protein L17

Chain BV

50S ribosomal protein L22