HL_4V4Y_089

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUAAGUU

Length

7 nucleotides

Bulged bases

4V4Y|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_089 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.3114

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

4V4Y|1|BA|G|1950
4V4Y|1|BA|U|1951
4V4Y|1|BA|A|1952
4V4Y|1|BA|A|1953
4V4Y|1|BA|G|1954
4V4Y|1|BA|U|1955
4V4Y|1|BA|U|1956

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BN

50S ribosomal protein L14