HL_4V4Y_094

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V4Y|1|BA|A|2268, 4V4Y|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_094 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.4154

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4Y|1|BA|C|2264
4V4Y|1|BA|U|2265
4V4Y|1|BA|A|2266
4V4Y|1|BA|A|2267
4V4Y|1|BA|A|2268
4V4Y|1|BA|A|2269
4V4Y|1|BA|G|2270
4V4Y|1|BA|G|2271
4V4Y|1|BA|U|2272
4V4Y|1|BA|A|2273
4V4Y|1|BA|A|2274
4V4Y|1|BA|C|2275
4V4Y|1|BA|G|2276

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BP

50S ribosomal protein L16

Chain BZ

Ribosomal protein L27