HL_4V4Y_097

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_097 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.3001

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4Y|1|BA|C|2355
4V4Y|1|BA|C|2356
4V4Y|1|BA|U|2357
4V4Y|1|BA|G|2358
4V4Y|1|BA|C|2359
4V4Y|1|BA|A|2360
4V4Y|1|BA|A|2361
4V4Y|1|BA|G|2362

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15

Chain BZ

Ribosomal protein L27